mrsiprep.io.naming

BIDS-like naming helpers.

Functions

anat_derivative(root, subject, session, ...)
chimera_derivative(root, subject, session, ...)
coverage_figure_derivative(root, subject, ...)
coverage_report_dir(root, subject, session)
coverage_report_html(root, subject, session)
mrsi_derivative(root, subject, session, ...)
mrsi_parcel_dir(root, subject, session)
parcellation_derivative(root, subject, ...)
prefix(subject[, session])
provenance_derivative(root, subject, session)
qc_report_derivative(root, subject, session, ...)
resampling_work_path(work_dir, subject, ...)	Scratch location (under --work-dir) for resampled maps needed only to render a report, not intended as a permanent BIDS derivative.
subject_session_dir(root, subject, session, ...)

mrsiprep.io.naming.anat_derivative(root, subject, session, **entities)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.chimera_derivative(root, subject, session, **entities)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.coverage_figure_derivative(root, subject, session, extension='png', **entities)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

• extension (str)

Return type:

Path

mrsiprep.io.naming.coverage_report_dir(root, subject, session)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.coverage_report_html(root, subject, session)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.mrsi_derivative(root, subject, session, **entities)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.mrsi_parcel_dir(root, subject, session)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.parcellation_derivative(root, subject, session, **entities)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.prefix(subject, session=None)

Parameters:

• subject (str)

• session (str | None)

Return type:

str

mrsiprep.io.naming.provenance_derivative(root, subject, session)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.qc_report_derivative(root, subject, session, step, extension='html')

Parameters:

• root (Path)

• subject (str)

• session (str | None)

• step (str)

• extension (str)

Return type:

Path

mrsiprep.io.naming.resampling_work_path(work_dir, subject, session, **entities)

Scratch location (under --work-dir) for resampled maps needed only to render a report, not intended as a permanent BIDS derivative.

Parameters:

• work_dir (Path)

• subject (str)

• session (str | None)

Return type:

Path

mrsiprep.io.naming.subject_session_dir(root, subject, session, suffix)

Parameters:

• root (Path)

• subject (str)

• session (str | None)

• suffix (str)

Return type:

Path