mrsiprep.registration.t1_to_mni

T1-to-MNI registration.

Functions

`compose_longitudinal_t1_to_mni`(config, ...)	Compose (session -> subject template) + (template -> MNI) forward transforms.
`run_t1_to_mni`(config, subject, session, t1_path)

Classes

T1ToMNIResult(forward, inverse, prefix, template)

class mrsiprep.registration.t1_to_mni.T1ToMNIResult(forward: 'list[Path]', inverse: 'list[Path]', prefix: 'Path', template: 'object')[source]

Bases: object

Parameters:

forward (list[Path])
inverse (list[Path])
prefix (Path)
template (object)

forward: list[Path]

inverse: list[Path]

prefix: Path

template: object

mrsiprep.registration.t1_to_mni.compose_longitudinal_t1_to_mni(config, subject, session, template_result, t1_path, mrsi_reference=None)[source]

Compose (session -> subject template) + (template -> MNI) forward transforms.

template_result is a SubjectTemplateResult from mrsiprep.registration.subject_template.build_subject_template, already built for this subject. The composed forward list is applied in order by apply_transforms/antspyx (session-to-template transform first, then template-to-MNI), matching the existing forward-transform-list convention used everywhere else in the codebase (see registration.transforms).

Parameters:

subject (str)
session (str)
t1_path (Path)
mrsi_reference (Path | None)

Return type:

T1ToMNIResult

mrsiprep.registration.t1_to_mni.run_t1_to_mni(config, subject, session, t1_path, mrsi_reference=None)[source]

Parameters:

subject (str)
session (str | None)
t1_path (Path)
mrsi_reference (Path | None)

Return type:

T1ToMNIResult