mrsiprep.parcellation.synthseg

Lightweight SynthSeg cortical and subcortical parcellation.

Functions

run_synthseg_parcellation(config, subject, ...)

Create a GM/WM-only SynthSeg atlas in native T1 and MRSI spaces.
mrsiprep.parcellation.synthseg.run_synthseg_parcellation(config, subject, session, raw_t1, mrsi_reference, t1_to_mrsi)[source]

Create a GM/WM-only SynthSeg atlas in native T1 and MRSI spaces.

Parameters:

  • subject (str)

  • session (str | None)

  • raw_t1 (Path)

  • mrsi_reference (Path)

  • t1_to_mrsi (list[Path])

Return type:

ParcellationResult